Package index • PLPBenchmarks

View tasks

View pre-specified tasks for real-world data mapped to the OMOP-CDM and the Eunomia dataset.

tasks: tasks
modelDesigns: modelDesigns
eunomiaTasks: eunomiaTasks
eunomiaDesigns: eunomiaDesigns

Create a benchmark design

Create a benchmark design and inspect it.

createBenchmarkDesign(): Create a benchmark analysis design
viewBenchmarkSettings(): View settings of a benchmark design

Create cohorts, extract data

Create cohorts on an OMOP-CDM instance and extract data from the CDM.

createBenchmarkCohorts(): Instantiates a set of cohorts
extractBenchmarkData(): Extract the data for the benchmark

Run a benchmark

Run the benchmark design and view results.

runBenchmarkDesign(): Run the benchmark models.
getBenchmarkModelPerformance(): Get the mode performance.
viewBenchmarkResults(): View a shiny app with the benchmark results

Other functions

Other functions used to offer some extra functionalities but will soon be deprecated.

createSampleTrainSetSettings(): Create sample settings to sample the train set.
viewBenchmarkTasks(): View the benchmark tasks
loadModelDesigns(): Loads the model design list